Biological sequence distance explorer system providing user visualization of genomic distance between a set of genomes in a dynamic zoomable fashion
US11456057B2 · kind B2 · utility
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20Claims
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Key dates
| Filing date | Mar 29, 2018 |
| Grant date | Sep 27, 2022 |
| Priority date | — |
| Expiry date | May 16, 2040 |
Classification
- Technology area (CPC G)Physics
- CPC primaryG16B50/00
- WIPO fieldComputer technology
- WIPO sectorElectrical engineering
Abstract
One embodiment provides for a method including determining, by at least one processor, sequence-sequence distances for a biological sequence collection. The at least one processor generates a matrix Mij of the sequence-sequence distances, where i and j are positive integers. The at least one processor further generates clusters for the matrix Mij by performing hierarchical clustering. A self-consistent taxonomy is created from the clusters. A visual heat map display of the matrix Mij is selectively controlled using metadata, zoom input and opacity input.
Source: USPTO / EPO open patent data. Objective bibliographic and citation counts.